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Resource "variant-state" Version "1" (CodeSystem)

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sequenceStatus

Codes providing the status of the variant test result

This code system http://hl7.org/fhir/variant-state defines the following codes:

Code Display Definition
positive positive the variant is detected
negative negative no variant is detected
absent absent result of the variant is missing

<?xml version="1.0" encoding="UTF-8"?>
<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="variant-state"/>
  <meta>
    <versionId value="1"/>
    <lastUpdated value="2018-09-20T01:09:22.753Z"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml">
      <h2>sequenceStatus</h2>
      <div>
        <p>Codes providing the status of the variant test result</p> </div>
      <p>This code system http://hl7.org/fhir/variant-state defines the following codes:</p>
      <table class="codes">
        <tr>
          <td>
            <b>Code</b> </td>
          <td>
            <b>Display</b> </td>
          <td>
            <b>Definition</b> </td> </tr>
        <tr>
          <td>positive
            <a name="variant-state-positive"> </a> </td>
          <td>positive</td>
          <td>the variant is detected</td> </tr>
        <tr>
          <td>negative
            <a name="variant-state-negative"> </a> </td>
          <td>negative</td>
          <td>no variant is detected</td> </tr>
        <tr>
          <td>absent
            <a name="variant-state-absent"> </a> </td>
          <td>absent</td>
          <td>result of the variant is missing</td> </tr> </table> </div>
  </text>
  <extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-ballot-status">
    <valueString value="Informative"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
    <valueInteger value="0"/>
  </extension>
  <url value="http://hl7.org/fhir/variant-state"/>
  <identifier>
    <system value="urn:ietf:rfc:3986"/>
    <value value="urn:oid:2.16.840.1.113883.4.642.1.211"/>
  </identifier>
  <version value="3.0.1"/>
  <name value="sequenceStatus"/>
  <status value="draft"/>
  <experimental value="false"/>
  <date value="2017-04-19T07:44:43+10:00"/>
  <publisher value="HL7 (FHIR Project)"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="http://hl7.org/fhir"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="fhir@lists.hl7.org"/>
    </telecom>
  </contact>
  <description value="Codes providing the status of the variant test result"/>
  <caseSensitive value="true"/>
  <valueSet value="http://hl7.org/fhir/ValueSet/variant-state"/>
  <content value="complete"/>
  <concept>
    <code value="positive"/>
    <display value="positive"/>
    <definition value="the variant is detected"/>
  </concept>
  <concept>
    <code value="negative"/>
    <display value="negative"/>
    <definition value="no variant is detected"/>
  </concept>
  <concept>
    <code value="absent"/>
    <display value="absent"/>
    <definition value="result of the variant is missing"/>
  </concept>
</CodeSystem>