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Resource "breastcancer" Version "1" (MolecularSequence)

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XML or JSON representation . provenance for this resource

Generated Narrative with Details

id: breastcancer

type: rna

coordinateSystem: 0

patient: Patient/brcapat

ReferenceSeqs

-ReferenceSeqIdWindowStartWindowEnd
*Homo sapiens BRCA2, DNA repair associated (BRCA2), mRNA (Details : {http://www.ncbi.nlm.nih.gov/nuccore/ code 'NM_000059.3' = 'NM_000059.3', given as 'Homo sapiens BRCA2, DNA repair associated (BRCA2), mRNA'})101488058101499444

Variants

-StartEndObservedAlleleReferenceAllele
*3231618632316187AC

{
  "resourceType" : "MolecularSequence",
  "id" : "breastcancer",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2018-12-14T02:02:38.301Z"
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: breastcancer</p><p><b>type</b>: rna</p><p><b>coordinateSystem</b>: 0</p><p><b>patient</b>: <a>Patient/brcapat</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>Homo sapiens BRCA2, DNA repair associated (BRCA2), mRNA <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore/ code 'NM_000059.3' = 'NM_000059.3', given as 'Homo sapiens BRCA2, DNA repair associated (BRCA2), mRNA'})</span></td><td>101488058</td><td>101499444</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>32316186</td><td>32316187</td><td>A</td><td>C</td></tr></table></div>"
  },
  "type" : "rna",
  "coordinateSystem" : 0,
  "patient" : {
    "reference" : "Patient/brcapat"
  },
  "referenceSeq" : {
    "referenceSeqId" : {
      "coding" : [
        {
          "system" : "http://www.ncbi.nlm.nih.gov/nuccore/",
          "code" : "NM_000059.3",
          "display" : "Homo sapiens BRCA2, DNA repair associated (BRCA2), mRNA"
        }
      ]
    },
    "windowStart" : 101488058,
    "windowEnd" : 101499444
  },
  "variant" : [
    {
      "start" : 32316186,
      "end" : 32316187,
      "observedAllele" : "A",
      "referenceAllele" : "C"
    }
  ]
}