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Resource "coord-1-base" Version "1" (MolecularSequence)

Tags:

XML or JSON representation . provenance for this resource

Generated Narrative with Details

id: coord-1-base

type: dna

coordinateSystem: 1

ReferenceSeqs

-ReferenceSeqStringStrandWindowStartWindowEnd
*ACGTAGTCwatson18

variant

start: 2

end: 3

observedAllele: ATG

referenceAllele: -

cigar: 3I

variant

start: 5

end: 5

observedAllele: T

referenceAllele: A

cigar: 3I

variant

start: 7

end: 7

observedAllele: -

referenceAllele: T

cigar: 1D

observedSeq: ACATGGTAGC


{
  "resourceType" : "MolecularSequence",
  "id" : "coord-1-base",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2018-12-14T02:02:38.364Z"
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: coord-1-base</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 1</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqString</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>ACGTAGTC</td><td>watson</td><td>1</td><td>8</td></tr></table><blockquote><p><b>variant</b></p><p><b>start</b>: 2</p><p><b>end</b>: 3</p><p><b>observedAllele</b>: ATG</p><p><b>referenceAllele</b>: -</p><p><b>cigar</b>: 3I</p></blockquote><blockquote><p><b>variant</b></p><p><b>start</b>: 5</p><p><b>end</b>: 5</p><p><b>observedAllele</b>: T</p><p><b>referenceAllele</b>: A</p><p><b>cigar</b>: 3I</p></blockquote><blockquote><p><b>variant</b></p><p><b>start</b>: 7</p><p><b>end</b>: 7</p><p><b>observedAllele</b>: -</p><p><b>referenceAllele</b>: T</p><p><b>cigar</b>: 1D</p></blockquote><p><b>observedSeq</b>: ACATGGTAGC</p></div>"
  },
  "type" : "dna",
  "coordinateSystem" : 1,
  "referenceSeq" : {
    "referenceSeqString" : "ACGTAGTC",
    "strand" : "watson",
    "windowStart" : 1,
    "windowEnd" : 8
  },
  "variant" : [
    {
      "start" : 2,
      "end" : 3,
      "observedAllele" : "ATG",
      "referenceAllele" : "-",
      "cigar" : "3I"
    },
    {
      "start" : 5,
      "end" : 5,
      "observedAllele" : "T",
      "referenceAllele" : "A",
      "cigar" : "3I"
    },
    {
      "start" : 7,
      "end" : 7,
      "observedAllele" : "-",
      "referenceAllele" : "T",
      "cigar" : "1D"
    }
  ],
  "observedSeq" : "ACATGGTAGC"
}