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Resource "example-TPMT-one" Version "1" (MolecularSequence)

Tags:

XML or JSON representation . provenance for this resource

Generated Narrative with Details

id: example-TPMT-one

type: dna

coordinateSystem: 1

patient: Patient/example

ReferenceSeqs

-ReferenceSeqIdStrandWindowStartWindowEnd
*NT_007592.15 (Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NT_007592.15' = 'NT_007592.15)watson1813091818143955

Variants

-StartEndObservedAlleleReferenceAllele
*1813921418139214AG

observedSeq: T-C-C-C-A-C-C-C


{
  "resourceType" : "MolecularSequence",
  "id" : "example-TPMT-one",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2018-12-14T02:02:38.442Z"
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-TPMT-one</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 1</p><p><b>patient</b>: <a>Patient/example</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NT_007592.15 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NT_007592.15' = 'NT_007592.15)</span></td><td>watson</td><td>18130918</td><td>18143955</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>18139214</td><td>18139214</td><td>A</td><td>G</td></tr></table><p><b>observedSeq</b>: T-C-C-C-A-C-C-C</p></div>"
  },
  "type" : "dna",
  "coordinateSystem" : 1,
  "patient" : {
    "reference" : "Patient/example"
  },
  "referenceSeq" : {
    "referenceSeqId" : {
      "coding" : [
        {
          "system" : "http://www.ncbi.nlm.nih.gov/nuccore",
          "code" : "NT_007592.15"
        }
      ]
    },
    "strand" : "watson",
    "windowStart" : 18130918,
    "windowEnd" : 18143955
  },
  "variant" : [
    {
      "start" : 18139214,
      "end" : 18139214,
      "observedAllele" : "A",
      "referenceAllele" : "G"
    }
  ],
  "observedSeq" : "T-C-C-C-A-C-C-C"
}