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Resource "example-pgx-1" Version "1" (MolecularSequence)

Tags:

XML or JSON representation . provenance for this resource

Generated Narrative with Details

id: example-pgx-1

type: dna

coordinateSystem: 0

patient: Patient/example

ReferenceSeqs

-OrientationReferenceSeqIdStrandWindowStartWindowEnd
*senseNG_007726.3 (Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NG_007726.3' = 'NG_007726.3)watson5522797055227980

Variants

-StartEndObservedAlleleReferenceAlleleVariantPointer
*5522797655227977GTTarget Haplotype Observation

{
  "resourceType" : "MolecularSequence",
  "id" : "example-pgx-1",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2018-12-14T02:02:38.379Z"
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-pgx-1</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><p><b>patient</b>: <a>Patient/example</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>Orientation</b></td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>sense</td><td>NG_007726.3 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NG_007726.3' = 'NG_007726.3)</span></td><td>watson</td><td>55227970</td><td>55227980</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td><td><b>VariantPointer</b></td></tr><tr><td>*</td><td>55227976</td><td>55227977</td><td>G</td><td>T</td><td><a>Target Haplotype Observation</a></td></tr></table></div>"
  },
  "type" : "dna",
  "coordinateSystem" : 0,
  "patient" : {
    "reference" : "Patient/example"
  },
  "referenceSeq" : {
    "orientation" : "sense",
    "referenceSeqId" : {
      "coding" : [
        {
          "system" : "http://www.ncbi.nlm.nih.gov/nuccore",
          "code" : "NG_007726.3"
        }
      ]
    },
    "strand" : "watson",
    "windowStart" : 55227970,
    "windowEnd" : 55227980
  },
  "variant" : [
    {
      "start" : 55227976,
      "end" : 55227977,
      "observedAllele" : "G",
      "referenceAllele" : "T",
      "variantPointer" : {
        "reference" : "Observation/example-haplotype1",
        "display" : "Target Haplotype Observation"
      }
    }
  ]
}