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Resource "example" Version "1" (MolecularSequence)

Tags:

XML or JSON representation . provenance for this resource

Generated Narrative with Details

id: example

type: dna

coordinateSystem: 0

patient: Patient/example

ReferenceSeqs

-ReferenceSeqIdStrandWindowStartWindowEnd
*NC_000009.11 (Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000009.11' = 'NC_000009.11)watson2212550022125510

Variants

-StartEndObservedAlleleReferenceAllele
*2212550322125504CG

Repositories

-TypeUrlNameVariantsetId
*openapihttp://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-type=application/jsonGA4GH API3:rs1333049

{
  "resourceType" : "MolecularSequence",
  "id" : "example",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2018-12-14T02:02:38.504Z"
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><p><b>patient</b>: <a>Patient/example</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NC_000009.11 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000009.11' = 'NC_000009.11)</span></td><td>watson</td><td>22125500</td><td>22125510</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>22125503</td><td>22125504</td><td>C</td><td>G</td></tr></table><h3>Repositories</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Url</b></td><td><b>Name</b></td><td><b>VariantsetId</b></td></tr><tr><td>*</td><td>openapi</td><td><a>http://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-type=application/json</a></td><td>GA4GH API</td><td>3:rs1333049</td></tr></table></div>"
  },
  "type" : "dna",
  "coordinateSystem" : 0,
  "patient" : {
    "reference" : "Patient/example"
  },
  "referenceSeq" : {
    "referenceSeqId" : {
      "coding" : [
        {
          "system" : "http://www.ncbi.nlm.nih.gov/nuccore",
          "code" : "NC_000009.11"
        }
      ]
    },
    "strand" : "watson",
    "windowStart" : 22125500,
    "windowEnd" : 22125510
  },
  "variant" : [
    {
      "start" : 22125503,
      "end" : 22125504,
      "observedAllele" : "C",
      "referenceAllele" : "G"
    }
  ],
  "repository" : [
    {
      "type" : "openapi",
      "url" : "http://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-type=application/json",
      "name" : "GA4GH API",
      "variantsetId" : "3:rs1333049"
    }
  ]
}