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Resource "example-cwl" Version "1" (Provenance)

Tags:

XML or JSON representation

Generated Narrative with Details

id: cwl-example

target: MolecularSequence/example-pgx-1

period: Nov 30, 2016 --> (ongoing)

recorded: Dec 1, 2016 8:12:14 AM

reason: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details: [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from high throughput sequencing data.')

Agents

- Role Who
* Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author', stated as 'null') Patient/example

Entities

- Role Reference
* source CWL example

{
  "resourceType" : "Provenance",
  "id" : "example-cwl",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2018-12-14T02:02:48.739Z"
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n&#9;&#9;&#9;<p>\n&#9;&#9;&#9;&#9;<b>Generated Narrative with Details</b>\n&#9;&#9;&#9;</p><p>\n&#9;&#9;&#9;&#9;<b>id</b>: cwl-example</p><p>\n&#9;&#9;&#9;&#9;<b>target</b>: <a href=\"http://build.fhir.org/sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n&#9;&#9;&#9;</p><p>\n&#9;&#9;&#9;&#9;<b>period</b>: Nov 30, 2016 --&gt; (ongoing)</p><p>\n&#9;&#9;&#9;&#9;<b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n&#9;&#9;&#9;&#9;<b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n high throughput sequencing data.')</p>\n&#9;&#9;&#9;<h3>Agents</h3>\n&#9;&#9;&#9;<table>\n&#9;&#9;&#9;&#9;<tr>\n&#9;&#9;&#9;&#9;&#9;<td>-</td>\n&#9;&#9;&#9;&#9;&#9;<td>\n&#9;&#9;&#9;&#9;&#9;&#9;<b>Role</b>\n&#9;&#9;&#9;&#9;&#9;</td>\n&#9;&#9;&#9;&#9;&#9;<td>\n&#9;&#9;&#9;&#9;&#9;&#9;<b>Who</b>\n&#9;&#9;&#9;&#9;&#9;</td>\n&#9;&#9;&#9;&#9;</tr>\n&#9;&#9;&#9;&#9;<tr>\n&#9;&#9;&#9;&#9;&#9;<td>*</td>\n&#9;&#9;&#9;&#9;&#9;<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n stated as 'null')</td>\n&#9;&#9;&#9;&#9;&#9;<td>\n&#9;&#9;&#9;&#9;&#9;&#9;<a href=\"http://build.fhir.org/patient-example.html\">Patient/example</a>\n&#9;&#9;&#9;&#9;&#9;</td>\n&#9;&#9;&#9;&#9;</tr>\n&#9;&#9;&#9;</table>\n&#9;&#9;&#9;<h3>Entities</h3>\n&#9;&#9;&#9;<table>\n&#9;&#9;&#9;&#9;<tr>\n&#9;&#9;&#9;&#9;&#9;<td>-</td>\n&#9;&#9;&#9;&#9;&#9;<td>\n&#9;&#9;&#9;&#9;&#9;&#9;<b>Role</b>\n&#9;&#9;&#9;&#9;&#9;</td>\n&#9;&#9;&#9;&#9;&#9;<td>\n&#9;&#9;&#9;&#9;&#9;&#9;<b>Reference</b>\n&#9;&#9;&#9;&#9;&#9;</td>\n&#9;&#9;&#9;&#9;</tr>\n&#9;&#9;&#9;&#9;<tr>\n&#9;&#9;&#9;&#9;&#9;<td>*</td>\n&#9;&#9;&#9;&#9;&#9;<td>source</td>\n&#9;&#9;&#9;&#9;&#9;<td>\n&#9;&#9;&#9;&#9;&#9;&#9;<a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n&#9;&#9;&#9;&#9;&#9;</td>\n&#9;&#9;&#9;&#9;</tr>\n&#9;&#9;&#9;</table>\n&#9;&#9;</div>"
  },
  "target" : [
    {
      "reference" : "MolecularSequence/example-pgx-1"
    }
  ],
  "occurredPeriod" : {
    "start" : "2016-11-30"
  },
  "recorded" : "2016-12-01T08:12:14+10:00",
  "reason" : [
    {
      "text" : "profiling Short Tandem Repeats (STRs) from high throughput sequencing data."
    }
  ],
  "agent" : [
    {
      "type" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/v3-ParticipationType",
            "code" : "AUT"
          }
        ]
      },
      "who" : {
        "reference" : "Patient/example"
      }
    }
  ],
  "entity" : [
    {
      "role" : "source",
      "what" : {
        "identifier" : {
          "type" : {
            "coding" : [
              {
                "system" : "https://github.com/common-workflow-language/workflows",
                "code" : "CWL",
                "display" : "lobSTR"
              }
            ]
          },
          "value" : "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl"
        }
      }
    }
  ]
}